Algotom
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Algotom
Index
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Index
A
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B
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C
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D
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E
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F
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G
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I
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J
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L
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M
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N
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O
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P
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R
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S
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T
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U
A
add_background_fluctuation() (in module algotom.util.simulation)
add_noise() (in module algotom.util.simulation)
add_stripe_artifact() (in module algotom.util.simulation)
algotom
module
algotom.io.converter
module
algotom.io.loadersaver
module
algotom.post.postprocessing
module
algotom.prep.calculation
module
algotom.prep.conversion
module
algotom.prep.correction
module
algotom.prep.filtering
module
algotom.prep.phase
module
algotom.prep.removal
module
algotom.rec.reconstruction
module
algotom.util.calibration
module
algotom.util.correlation
module
algotom.util.simulation
module
algotom.util.utility
module
align_image_stacks() (in module algotom.prep.phase)
apply_1d_regularizer() (in module algotom.util.utility)
apply_circular_ramp_filter() (in module algotom.rec.reconstruction)
apply_filter_to_wavelet_component() (in module algotom.util.utility)
apply_gaussian_filter() (in module algotom.util.utility)
apply_method_to_multiple_sinograms() (in module algotom.util.utility)
apply_ramp_filter() (in module algotom.rec.reconstruction)
apply_regularization_filter() (in module algotom.util.utility)
apply_wavelet_decomposition() (in module algotom.util.utility)
apply_wavelet_reconstruction() (in module algotom.util.utility)
astra_reconstruction() (in module algotom.rec.reconstruction)
B
back_projection_cpu() (in module algotom.rec.reconstruction)
back_projection_gpu() (in module algotom.rec.reconstruction)
back_projection_gpu_chunk() (in module algotom.rec.reconstruction)
beam_hardening_correction() (in module algotom.prep.correction)
binarize_image() (in module algotom.util.calibration)
bpf_reconstruction() (in module algotom.rec.reconstruction)
C
calculate_center_metric() (in module algotom.prep.calculation)
calculate_curvature() (in module algotom.prep.calculation)
calculate_distance() (in module algotom.util.calibration)
calculate_maximum_index() (in module algotom.prep.calculation)
calculate_reconstructable_height() (in module algotom.prep.calculation)
calculate_regularization_coefficient() (in module algotom.util.utility)
calculate_threshold() (in module algotom.util.calibration)
check_dot_size() (in module algotom.util.calibration)
check_level() (in module algotom.util.utility)
check_zinger_size() (in module algotom.prep.removal)
coarse_search_cor() (in module algotom.prep.calculation)
complex_gradient() (in module algotom.prep.calculation)
convert_sinogram_180_to_360() (in module algotom.prep.conversion)
convert_sinogram_360_to_180() (in module algotom.prep.conversion)
convert_tif_to_hdf() (in module algotom.io.converter)
convert_to_Xray_image() (in module algotom.util.simulation)
correlation_metric() (in module algotom.prep.calculation)
D
detect_sample() (in module algotom.util.utility)
detect_stripe() (in module algotom.util.utility)
dfi_reconstruction() (in module algotom.rec.reconstruction)
double_wedge_filter() (in module algotom.prep.filtering)
downsample() (in module algotom.post.postprocessing)
downsample_cor() (in module algotom.prep.calculation)
downsample_dataset() (in module algotom.post.postprocessing)
E
extend_sinogram() (in module algotom.prep.conversion)
extract_tif_from_hdf() (in module algotom.io.converter)
F
fbp_reconstruction() (in module algotom.rec.reconstruction)
find_center_360() (in module algotom.prep.calculation)
find_center_based_phase_correlation() (in module algotom.prep.calculation)
find_center_based_slice_metric() (in module algotom.rec.reconstruction)
find_center_projection() (in module algotom.prep.calculation)
find_center_visual_sinograms() (in module algotom.util.utility)
find_center_visual_slices() (in module algotom.rec.reconstruction)
(in module algotom.util.utility)
find_center_vo() (in module algotom.prep.calculation)
find_file() (in module algotom.io.loadersaver)
find_global_shift_based_local_shifts() (in module algotom.util.correlation)
find_hdf_key() (in module algotom.io.loadersaver)
find_local_shifts() (in module algotom.util.correlation)
find_local_shifts_umpa() (in module algotom.util.correlation)
find_overlap() (in module algotom.prep.calculation)
find_overlap_multiple() (in module algotom.prep.calculation)
find_shift_based_correlation_map() (in module algotom.util.correlation)
find_shift_based_phase_correlation() (in module algotom.prep.calculation)
find_shift_between_image_stacks() (in module algotom.prep.phase)
find_shift_between_sample_images() (in module algotom.prep.phase)
find_tilt_roll() (in module algotom.util.calibration)
find_tilt_roll_based_ellipse_fit() (in module algotom.util.calibration)
find_tilt_roll_based_linear_fit() (in module algotom.util.calibration)
fine_search_cor() (in module algotom.prep.calculation)
fit_points_to_ellipse() (in module algotom.util.calibration)
fix_non_sample_areas() (in module algotom.util.utility)
flat_field_correction() (in module algotom.prep.correction)
fresnel_filter() (in module algotom.prep.filtering)
G
generate_blob_mask() (in module algotom.prep.removal)
generate_correlation_map() (in module algotom.util.correlation)
generate_fitted_image() (in module algotom.util.utility)
generate_full_sinogram_helical_scan() (in module algotom.prep.conversion)
generate_mapping_coordinate() (in module algotom.rec.reconstruction)
generate_sinogram_helical_scan() (in module algotom.prep.conversion)
generate_spiral_positions() (in module algotom.util.utility)
generate_tilted_profile_chunk() (in module algotom.prep.correction)
generate_tilted_profile_line() (in module algotom.prep.correction)
generate_tilted_sinogram() (in module algotom.prep.correction)
generate_tilted_sinogram_chunk() (in module algotom.prep.correction)
get_dot_size() (in module algotom.util.calibration)
get_hdf_information() (in module algotom.io.loadersaver)
get_hdf_tree() (in module algotom.io.loadersaver)
get_image_stack() (in module algotom.io.loadersaver)
get_quality_map() (in module algotom.prep.phase)
get_reference_sample_stacks() (in module algotom.io.loadersaver)
get_reference_sample_stacks_dls() (in module algotom.io.loadersaver)
get_statistical_information() (in module algotom.post.postprocessing)
get_statistical_information_dataset() (in module algotom.post.postprocessing)
get_tif_stack() (in module algotom.io.loadersaver)
get_transmission_dark_field_signal() (in module algotom.prep.phase)
get_weight_mask() (in module algotom.prep.phase)
gridrec_reconstruction() (in module algotom.rec.reconstruction)
I
interpolate_inside_stripe() (in module algotom.util.utility)
invert_dot_contrast() (in module algotom.util.calibration)
J
join_image() (in module algotom.prep.conversion)
join_image_multiple() (in module algotom.prep.conversion)
L
load_distortion_coefficient() (in module algotom.io.loadersaver)
load_hdf() (in module algotom.io.loadersaver)
load_image() (in module algotom.io.loadersaver)
load_image_multiple() (in module algotom.io.loadersaver)
locate_peak() (in module algotom.util.correlation)
locate_slice() (in module algotom.util.utility)
locate_slice_chunk() (in module algotom.util.utility)
M
make_2d_butterworth_window() (in module algotom.util.utility)
make_2d_damping_window() (in module algotom.util.utility)
make_2d_gaussian_window() (in module algotom.util.utility)
make_2d_ramp_window() (in module algotom.rec.reconstruction)
make_circle_mask() (in module algotom.util.utility)
make_circular_ramp_window() (in module algotom.rec.reconstruction)
make_double_wedge_mask() (in module algotom.prep.filtering)
make_elliptic_mask() (in module algotom.util.simulation)
make_face_phantom() (in module algotom.util.simulation)
make_file_name() (in module algotom.io.loadersaver)
make_folder() (in module algotom.io.loadersaver)
make_folder_name() (in module algotom.io.loadersaver)
make_fresnel_window() (in module algotom.prep.filtering)
make_inverse_double_wedge_mask() (in module algotom.prep.calculation)
make_line_target() (in module algotom.util.simulation)
make_rectangular_mask() (in module algotom.util.simulation)
make_sinogram() (in module algotom.util.simulation)
make_smoothing_window() (in module algotom.rec.reconstruction)
make_triangular_mask() (in module algotom.util.simulation)
make_weight_matrix() (in module algotom.prep.conversion)
mapping() (in module algotom.util.utility)
module
algotom
algotom.io.converter
algotom.io.loadersaver
algotom.post.postprocessing
algotom.prep.calculation
algotom.prep.conversion
algotom.prep.correction
algotom.prep.filtering
algotom.prep.phase
algotom.prep.removal
algotom.rec.reconstruction
algotom.util.calibration
algotom.util.correlation
algotom.util.simulation
algotom.util.utility
mtf_deconvolution() (in module algotom.prep.correction)
N
non_linear_function() (in module algotom.prep.correction)
normalize_background() (in module algotom.util.calibration)
normalize_background_based_fft() (in module algotom.util.calibration)
normalize_image() (in module algotom.util.correlation)
O
open_hdf_stream() (in module algotom.io.loadersaver)
P
parallel_process_slices() (in module algotom.util.utility)
polar_from_rectangular() (in module algotom.util.utility)
R
reconstruct_surface_from_gradient_FC_method() (in module algotom.prep.phase)
reconstruct_surface_from_gradient_SCS_method() (in module algotom.prep.phase)
rectangular_from_polar() (in module algotom.util.utility)
remove_all_stripe() (in module algotom.prep.removal)
remove_blob() (in module algotom.prep.removal)
remove_blob_1d() (in module algotom.prep.removal)
remove_dead_stripe() (in module algotom.prep.removal)
remove_large_stripe() (in module algotom.prep.removal)
remove_ring_based_fft() (in module algotom.post.postprocessing)
remove_ring_based_wavelet_fft() (in module algotom.post.postprocessing)
remove_stripe_based_2d_filtering_sorting() (in module algotom.prep.removal)
remove_stripe_based_fft() (in module algotom.prep.removal)
remove_stripe_based_filtering() (in module algotom.prep.removal)
remove_stripe_based_fitting() (in module algotom.prep.removal)
remove_stripe_based_interpolation() (in module algotom.prep.removal)
remove_stripe_based_normalization() (in module algotom.prep.removal)
remove_stripe_based_regularization() (in module algotom.prep.removal)
remove_stripe_based_sorting() (in module algotom.prep.removal)
remove_stripe_based_wavelet_fft() (in module algotom.prep.removal)
remove_zinger() (in module algotom.prep.removal)
rescale() (in module algotom.post.postprocessing)
rescale_dataset() (in module algotom.post.postprocessing)
reslice_dataset() (in module algotom.post.postprocessing)
retrieve_phase_based_speckle_tracking() (in module algotom.prep.phase)
S
save_distortion_coefficient() (in module algotom.io.loadersaver)
save_image() (in module algotom.io.loadersaver)
save_image_multiple() (in module algotom.io.loadersaver)
search_overlap() (in module algotom.prep.calculation)
select_dot_based_size() (in module algotom.util.calibration)
select_zinger() (in module algotom.prep.removal)
separate_frequency_component() (in module algotom.util.utility)
sort_backward() (in module algotom.util.utility)
sort_forward() (in module algotom.util.utility)
stitch_image() (in module algotom.prep.conversion)
stitch_image_multiple() (in module algotom.prep.conversion)
T
transform_1d_window_to_2d() (in module algotom.util.utility)
transform_slice_backward() (in module algotom.util.utility)
transform_slice_forward() (in module algotom.util.utility)
U
unwarp_projection() (in module algotom.prep.correction)
unwarp_sinogram() (in module algotom.prep.correction)
unwarp_sinogram_chunk() (in module algotom.prep.correction)
unwrap_phase_based_cosine_transform() (in module algotom.prep.phase)
unwrap_phase_based_fft() (in module algotom.prep.phase)
unwrap_phase_iterative_fft() (in module algotom.prep.phase)
upsample_sinogram() (in module algotom.prep.correction)
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